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Cell surface protein engineering for high-performance whole-cell catalysts

Hajime Nakatani,Katsutoshi Hori

《化学科学与工程前沿（英文）》 2017年 第11卷 第1期   页码 46-57 doi: 10.1007/s11705-017-1609-3

摘要： Cell surface protein engineering facilitated by accumulation of information on genome and protein structure involves heterologous production and modification of cell surface proteins using genetic engineering, and is important for the development of high-performance whole-cell catalysts. In this field, cell surface display is a major technology by exposing target proteins, such as enzymes, on the cell surface using a carrier protein. The target proteins are fused to the carrier proteins that transport and tether them to the cell surface, as well as to a secretion signal. This paper reviews cell surface display systems for prokaryotic and eukaryotic cells from the perspective of carrier proteins, which determine the number of displayed molecules, and the localization, size, and direction ( or terminal anchoring) of the passengers. We also discuss advanced methods for displaying multiple enzymes and a new method for the immobilization of whole-cell catalysts using adhesive surface proteins.

关键词： cell surface engineering     surface display     whole-cell catalysts     bioprocess    

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Materials and surface engineering to control bacterial adhesion and biofilm formation: A review of recent

Huan GU, Dacheng REN

《化学科学与工程前沿（英文）》 2014年 第8卷 第1期   页码 20-33 doi: 10.1007/s11705-014-1412-3

摘要： Bacterial adhesion to surfaces and subsequent biofilm formation are a leading cause of chronic infections and biofouling. These processes are highly sensitive to environmental factors and present a challenge to research using traditional approaches with uncontrolled surfaces. Recent advances in materials research and surface engineering have brought exciting opportunities to pattern bacterial cell clusters and to obtain synthetic biofilms with well-controlled cell density and morphology of cell clusters. In this article, we will review the recent achievements in this field and comment on the future directions.

关键词： surface engineering     materials     bacterial adhesion     biofilm     control     review    

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The stem cell and tissue engineering research in Chinese ophthalmology

GE Jian, LIU Jingbo

《医学前沿（英文）》 2007年 第1卷 第1期   页码 6-10 doi: 10.1007/s11684-007-0002-x

摘要： Much has been considerably developed recently in the ophthalmic research of stem cell (SC) and tissue engineering (TE). They have become closer to the clinical practice, standardized and observable. Leading edge research of SC and TE on the ocular surface reconstruction, neuroregeneration and protection, and natural animal model has become increasingly available. However, challenges remain on the way, especially on the aspects of function reconstruction and specific differentiation. This paper reviews the new developments in this area with an intention of identifying research priorities for the future.

关键词： available     observable     neuroregeneration     protection     function reconstruction    

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Bone regeneration by stem cell and tissue engineering in oral and maxillofacial region

Zhiyuan Zhang

《医学前沿（英文）》 2011年 第5卷 第4期   页码 401-413 doi: 10.1007/s11684-011-0161-7

摘要： Clinical imperatives for the reconstruction of jaw bone defects or resorbed alveolar ridge require new therapies or procedures instead of autologous/allogeneic bone grafts. Regenerative medicine, based on stem cell science and tissue engineering technology, is considered as an ideal alternative strategy for bone regeneration. In this paper, we review the current choices of cell source and strategies on directing the osteogenic differentiation of stem cells. The preclinical animal models for bone regeneration and the key translational points to clinical success in oral and maxillofacial region are also discussed. We propose comprehensive strategies based on stem cell and tissue engineering researches, allowing for clinical application in oral and maxillofacial region.

关键词： bone regeneration     animal models     translational strategies     oral and maxillofacial region    

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Dynamic changes of protein corona compositions on the surface of zinc oxide nanoparticle in cell culture

Vo-Van Giau, Yoon-Hee Park, Kyu-Hwan Shim, Sang-Wook Son, Seong-Soo A. An

《化学科学与工程前沿（英文）》 2019年 第13卷 第1期   页码 90-97 doi: 10.1007/s11705-018-1766-z

摘要：

The potential applications of nanomaterials used in nanomedicine as ingredients in drug delivery systems and in other products continue to expand. When nanomaterials are introduced into physiological environments and driven by energetics, they readily associate proteins forming a protein corona (PC) on their surface. This PC could result in an alteration of the nanomaterial’s surface characteristics, affecting their interaction with cells due to conformational changes in adsorbed protein molecules. However, our current understanding of nanobiological interactions is still very limited. Utilizing a liquid chromatography–mass spectroscopy/mass spectroscopy technology and a Cytoscape plugin (ClueGO) approach, we examined the composition of the PC for a set of zinc oxide nanoparticles (ZnONP) from cell culture media typically and further analyzed the biological interaction of identified proteins, respectively. In total, 36 and 33 common proteins were investigated as being bound to ZnONP at 5 min and 60 min, respectively. These proteins were further analyzed with ClueGO, a Cytoscape plugin, which provided gene ontology and the biological interaction processes of identified proteins. Proteins bound to the surface of nanoparticles that may modify the structure, therefore the function of the adsorbed protein could be consequently affect the complicated biological processes.

关键词： ZnONPs     nanoparticles     protein corona     ClueGO    

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工程过程中分子间和表面间相互作用 Review

张嘉文, 曾宏波

《工程（英文）》 2021年 第7卷 第1期   页码 63-83 doi: 10.1016/j.eng.2020.08.017

摘要：

在复杂流体中，化学试剂、固体颗粒、气泡、液滴和固体表面间的相互作用在许多工程过程中起着至关重要的作用，如泡沫浮选、乳液和泡沫形成、吸附、污垢、防污现象等。这些在分子、纳米和微观尺度上的相互作用显著地影响并决定了相关工程过程的宏观性能和效率。理解工程过程中的分子间和表面间相互作用具有基础和实际意义，这不仅改善了生产技术，而且为新材料的开发提供了有价值的见解。本文首先介绍了各种工程过程中涉及的典型分子间和表面间相互作用，包括Derjaguin-Landau-Verwey-Overbeek（DLVO）相互作用（即范德华相互作用和双电层相互作用）和非DLVO相互作用（如空间位阻和疏水相互作用）。本文简要介绍了用于测量复杂流体中分子间和表面间相互作用力的原子力显微镜和表面力仪等纳米力学技术；综述了近年来我们对矿物浮选、石油工程、废水处理、储能材料这些工程体系中分子间和表面间相互作用的研究进展；讨论了这些基本相互作用机制与解决工程挑战中的实际应用之间的相关性，并对未来的研究领域进行前景展望。

 

关键词： 分子间和表面间相互作用     胶体     乳液     界面科学     工程过程     原子力显微镜     表面力仪    

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Corrigendum to “Emerging Organic Contaminants in Chinese Surface Water: Identification of Priority Pollutants” [Engineering 11 (2022) 111–125] Corrigendum

Mengmeng Zhong, Tielong Wang, Wenxing Zhao, Jun Huang, Bin Wang, Lee Blaney, Qingwei Bu, Gang Yu

《工程（英文）》 2023年 第31卷 第12期   页码 139-140 doi: 10.1016/j.eng.2022.09.001

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Current advances for bone regeneration based on tissue engineering strategies

Rui Shi, Yuelong Huang, Chi Ma, Chengai Wu, Wei Tian

《医学前沿（英文）》 2019年 第13卷 第2期   页码 160-188 doi: 10.1007/s11684-018-0629-9

摘要： Bone tissue engineering (BTE) is a rapidly developing strategy for repairing critical-sized bone defects to address the unmet need for bone augmentation and skeletal repair. Effective therapies for bone regeneration primarily require the coordinated combination of innovative scaffolds, seed cells, and biological factors. However, current techniques in bone tissue engineering have not yet reached valid translation into clinical applications because of several limitations, such as weaker osteogenic differentiation, inadequate vascularization of scaffolds, and inefficient growth factor delivery. Therefore, further standardized protocols and innovative measures are required to overcome these shortcomings and facilitate the clinical application of these techniques to enhance bone regeneration. Given the deficiency of comprehensive studies in the development in BTE, our review systematically introduces the new types of biomimetic and bifunctional scaffolds. We describe the cell sources, biology of seed cells, growth factors, vascular development, and the interactions of relevant molecules. Furthermore, we discuss the challenges and perspectives that may propel the direction of future clinical delivery in bone regeneration.

关键词： bone tissue engineering     stem cell     bone scaffold     growth factor     bone regeneration    

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Surface Interaction Mechanisms in Petroleum ProductionProcesses" [Engineering 18 (2022) 49–61]"> Erratum to "Probing the Interfacial Forces and Surface Interaction Mechanisms in Petroleum ProductionProcesses" [Engineering 18 (2022) 49–61] Erratum

Diling Yang,Xuwen Peng,Qiongyao Peng,Tao Wang,Chenyu Qiao,Ziqian Zhao,Lu Gong,Yueliang Liu,Hao Zhang,Hongbo Zeng

《工程（英文）》 2023年 第22卷 第3期   页码 233-233 doi: 10.1016/j.eng.2023.02.001

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Reverse engineering in the construction of numerical simulation oriented patient-specific model of stented

Xianlong MENG, Wenyu FU, Yun ZHANG, Aike QIAO,

《机械工程前沿（英文）》 2010年 第5卷 第3期   页码 328-335 doi: 10.1007/s11465-010-0026-9

摘要： Patient-specific models are widely used in hemodynamic simulations. The flow in the boundary layer changes so strongly that fine meshes in the boundary layer are required in numerical simulations, especially for the calculation of wall shear stress and its gradient. To precisely analyze hemodynamics, it is necessary to investigate the approaches to the reconstruction of a numerical simulation-oriented patient-specific model for aortic arch aneurysm that can perform particular meshing in the boundary layer. Based on a surface model of aortic arch aneurysm in STL format, reverse engineering concept was applied to reconstruct a solid model using CAD software Geomagic and Pro/E, and a simplified model of stent for the intervention of aortic arch aneurysm was also created. After these models were imported to ANSYS, a block modeling approach was employed to divide the whole model into several domain blocks to adopt different meshing strategies. Particular meshing was performed especially in the boundary layer and around the stents. The finite element model particularly suitable for numerical simulation of hemodynamics was obtained. Hemodynamic simulation was performed, using the constructed finite element model to verify its applicability. The results indicate that reverse engineering concept and the proposed block modeling approach can be used to divide the solid model of aortic arch aneurysm into multiple volumes, which can be meshed according to particular requirements in each volume; the finite element model of stented aortic arch aneurysm can be employed to simulate hemodynamics. The approaches of modeling were applicable not only for aortic arch aneurysm, but also for similar model reconstruction as a reference in hemodynamic simulation investigations.

关键词： reverse engineering     aortic arch aneurysm     surface model     meshing     finite element model    

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via PdCoAg/AC nanoparticles and anodic current in alkaline medium: experimental design with response surface

Hilal ÇELİK KAZICI, Şakir YILMAZ, Tekin ŞAHAN, Fikret YILDIZ, Ömer Faruk ER, Hilal KIVRAK

《能源前沿（英文）》 2020年 第14卷 第3期   页码 578-589 doi: 10.1007/s11708-020-0808-7

摘要： In this paper, the optimization of hydrogen (H ) production by ammonia borane (NH BH ) over PdCoAg/AC was investigated using the response surface methodology. Besides, the electro-oxidation of NH BH was determined and optimized using the same method to measure its potential use in the direct ammonium boran fuel cells. Moreover, the ternary alloyed catalyst was synthesized using the chemical reduction method. The synergistic effect between Pd, Co and Ag plays an important role in enhancement of NH BH hydrolysis. In addition, the support effect could also efficiently improve the catalytic performance. Furthermore, the effects of NH BH concentration (0.1–50 mmol/5 mL), catalyst amount (1–30 mg) and temperature (20°C–50°C) on the rate of H production and the effects of temperature (20°C–50°C), NH BH concentration (0.05–1 mol/L) and catalyst amount (0.5–5 µL) on the electro-oxidation reaction of NH BH were investigated using the central composite design experimental design. The implementation of the response surface methodology resulted in the formulation of four models out of which the quadratic model was adjudged to efficiently appropriate the experimental data. A further statistical analysis of the quadratic model demonstrated the significance of the model with a p-value far less than 0.05 for each model and coefficient of determination ( ) of 0.85 and 0.95 for H production rate and NH BH electrroxidation peak current, respectively.

关键词： ammonia borane     hydrogen production     fuel cell     response surface methodology    

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following mutagenesis at two sites near the catalytic pocket and the application of peroxidase-coated yeast cell

Karla Ilić Đurđić, Raluca Ostafe, Olivera Prodanović, Aleksandra Đurđević Đelmaš, Nikolina Popović, Rainer Fischer, Stefan Schillberg, Radivoje Prodanović

《环境科学与工程前沿（英文）》 2021年 第15卷 第2期 doi: 10.1007/s11783-020-1311-4

摘要： Abstract • Mutations in Lignin peroxidase Trp171 environment improved azo dyes degradation. • Expression on yeast cell surface and cell lysis allowed reusability of biocatalyst. • Aga2-LiP chimeric variants were characterized. The enzymatic degradation of azo dyes is a promising alternative to ineffective chemical and physical remediation methods. Lignin peroxidase (LiP) from Phanerochaete chrysosporium is a heme-containing lignin-degrading oxidoreductase that catalyzes the peroxide-dependent oxidation of diverse molecules, including industrial dyes. This enzyme is therefore ideal as a starting point for protein engineering. Accordingly, we subjected two positions (165 and 264) in the environment of the catalytic Trp171 residue to saturation mutagenesis, and the resulting library of 104 independent clones was expressed on the surface of yeast cells. This yeast display library was used for the selection of variants with the ability to break down structurally-distinct azo dyes more efficiently. We identified mutants with up to 10-fold greater affinity than wild-type LiP for three diverse azo dyes (Evans blue, amido black 10B and Guinea green) and up to 13-fold higher catalytic activity. Additionally, cell wall fragments displaying mutant LiP enzymes were prepared by toluene-induced cell lysis, achieving significant increases in both enzyme activity and stability compared to a whole-cell biocatalyst. LiP-coated cell wall fragments retained their initial dye degradation activity after 10 reaction cycles each lasting 8 h. The best-performing mutants removed up to 2.5-fold more of each dye than the wild-type LiP in multiple reaction cycles.

关键词： Bioremediation     Enzyme immobilization     Protein engineering     Yeast surface display.    

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Electrolytic cell engineering and device optimization for electrosynthesis of e-biofuels via co-valorisation

Faraz Montazersadgh, Hao Zhang, Anas Alkayal, Benjamin Buckley, Ben W. Kolosz, Bing Xu, Jin Xuan

《化学科学与工程前沿（英文）》 2021年 第15卷 第1期   页码 208-219 doi: 10.1007/s11705-020-1945-6

摘要： Utilizing CO in an electro-chemical process and synthesizing value-added chemicals are amongst the few viable and scalable pathways in carbon capture and utilization technologies. CO electro-reduction is also counted as one of the main options entailing less fossil fuel consumption and as a future electrical energy storage strategy. The current study aims at developing a new electrochemical platform to produce low-carbon e-biofuel through multifunctional electrosynthesis and integrated co-valorisation of biomass feedstocks with captured CO . In this approach, CO is reduced at the cathode to produce drop-in fuels (e.g., methanol) while value-added chemicals (e.g., selective oxidation of alcohols, aldehydes, carboxylic acids and amines/amides) are produced at the anode. In this work, a numerical model of a continuous-flow design considering various anodic and cathodic reactions was built to determine the most techno-economically feasible configurations from the aspects of energy efficiency, environment impact and economical values. The reactor design was then optimized via parametric analysis.

关键词： electrosynthesis     e-biofuels     CO2 utilization     computational model    

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组织工程学——现代生物生命科学的前沿

张涤生

《中国工程科学》 2000年 第2卷 第10期   页码 21-25

摘要：

组织工程是应用细胞生物学和工程学的原理研究和开发，以达到修复和重建损伤的组织或器官的外形和功能的生物替代物的一门新学科，是继细胞生物学和分子生物学后，人类生命科学发展史上又一新的里程碑，标志着医学将超越组织和器官移植的旧模式，进人制造组织和器官的新时代，将在21世纪中绽露头角。

文章简略介绍世界组织工程发展历史及各类组织和器官组织工程的研究现状，并介绍我国组织工程科研工作开展的最新情况。目前组织工程已有了迅猛发展，在不少方面已取得重大突破。由于其孕育的巨大科学价值_及广阔的研究和应用前景，因此加快我国组织工程的研究，尽早地投人临床应用，对我国医学科学事业和国民经济的发展具有重大意义。

关键词： 组织工程     可降解材料     组织器官重建     种子细胞    

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电化学氢-水转化系统中电解水和氢燃料电池催化剂的设计 Review

彭立山, 魏子栋

《工程（英文）》 2020年 第6卷 第6期   页码 653-679 doi: 10.1016/j.eng.2019.07.028

摘要：

在当前的能源需求和气候变化的背景下，可持续能源系统的研究已取得实质性进展。氢-水电化学转化是一种理想的、无化石原料使用的可持续能源系统。然而，该能源系统中两种核心技术的能量转换，即电解水和燃料电池，仍有很大的改进空间。本文分析了氢-水能源系统中电解水和燃料电池的能量耗散，并讨论了在催化剂表面发生的涉及氢-氧反应的主要障碍。通过反应性中间体与表观催化性能之间的标度关系，本文总结了催化活性趋势的框架，为高活性氢-氧反应电催化剂的设计提供了思路。文中介绍了一系列基于催化性能的结构工程方法（包括纳米结构化、晶面工程、相工程、非晶化、缺陷工程、元素掺杂、界面工程和合金化）及其应用，着重介绍从以往的理论和实验研究中得到的合理指导，并概述了电化学氢-水转化系统中的关键科学问题，提出了开发具有高能量转化率的催化剂的研究方向。

关键词： 可再生能源系统     氢–水电化学循环     电催化     电催化剂工程     结构设计     水电解     燃料电池    

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标题 作者 时间 类型 操作

Cell surface protein engineering for high-performance whole-cell catalysts

Hajime Nakatani,Katsutoshi Hori

期刊论文

Materials and surface engineering to control bacterial adhesion and biofilm formation: A review of recent

Huan GU, Dacheng REN

期刊论文

The stem cell and tissue engineering research in Chinese ophthalmology

GE Jian, LIU Jingbo

期刊论文

Bone regeneration by stem cell and tissue engineering in oral and maxillofacial region

Zhiyuan Zhang

期刊论文

Dynamic changes of protein corona compositions on the surface of zinc oxide nanoparticle in cell culture

Vo-Van Giau, Yoon-Hee Park, Kyu-Hwan Shim, Sang-Wook Son, Seong-Soo A. An

期刊论文

工程过程中分子间和表面间相互作用

张嘉文, 曾宏波

期刊论文

Corrigendum to “Emerging Organic Contaminants in Chinese Surface Water: Identification of Priority Pollutants” [Engineering 11 (2022) 111–125]

Mengmeng Zhong, Tielong Wang, Wenxing Zhao, Jun Huang, Bin Wang, Lee Blaney, Qingwei Bu, Gang Yu

期刊论文

Current advances for bone regeneration based on tissue engineering strategies

Rui Shi, Yuelong Huang, Chi Ma, Chengai Wu, Wei Tian

期刊论文

Erratum to "Probing the Interfacial Forces and Surface Interaction Mechanisms in Petroleum ProductionProcesses" [Engineering 18 (2022) 49–61]

Diling Yang,Xuwen Peng,Qiongyao Peng,Tao Wang,Chenyu Qiao,Ziqian Zhao,Lu Gong,Yueliang Liu,Hao Zhang,Hongbo Zeng

期刊论文

Reverse engineering in the construction of numerical simulation oriented patient-specific model of stented

Xianlong MENG, Wenyu FU, Yun ZHANG, Aike QIAO,

期刊论文

via PdCoAg/AC nanoparticles and anodic current in alkaline medium: experimental design with response surface

Hilal ÇELİK KAZICI, Şakir YILMAZ, Tekin ŞAHAN, Fikret YILDIZ, Ömer Faruk ER, Hilal KIVRAK

期刊论文

following mutagenesis at two sites near the catalytic pocket and the application of peroxidase-coated yeast cell

Karla Ilić Đurđić, Raluca Ostafe, Olivera Prodanović, Aleksandra Đurđević Đelmaš, Nikolina Popović, Rainer Fischer, Stefan Schillberg, Radivoje Prodanović

期刊论文

Electrolytic cell engineering and device optimization for electrosynthesis of e-biofuels via co-valorisation

Faraz Montazersadgh, Hao Zhang, Anas Alkayal, Benjamin Buckley, Ben W. Kolosz, Bing Xu, Jin Xuan

期刊论文

组织工程学——现代生物生命科学的前沿

张涤生

期刊论文

电化学氢-水转化系统中电解水和氢燃料电池催化剂的设计

彭立山, 魏子栋

期刊论文